Difference between revisions of "News"

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=== 2024 ===
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* Oct: Jingzhi Pu presented at the [https://symposia.smart.org.cn/sym/event/02c7c44a1a4e44039e9dab4b4ccb3ad6/658e23ed-d78d-4b35-9f36-ff2254925b38 SMART Symposium: AI-Driven Computational Biology and Medicine] in Shenzhen, China.
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* Aug: Jingzhi Pu co-organized an [https://acs.digitellinc.com/p/s/symposium-in-honor-of-the-80th-birthday-of-prof-donald-g-truhlar-607480 ACS COMP symposium in honor of the 80th Birthday of Prof. Donald G. Truhlar].
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=== 2023 ===
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* Sept: Taemoor Hasan and Salma Abdelhamid joined the lab as [https://www.iupui.edu/research/opportunities.html 1st-year Research Immersion Program (1RIP)] undergraduate scholars. Welcome!
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* Sept: Tinh Ho joined the lab as a PhD student co-advised by [https://basu.chem.iupui.edu/ Prof. Partha Basu]. Welcome!
 +
* Sept: Dongru Li joined the lab as a PhD student. Welcome!
 +
* Sept: Hysum Qazi received an academic-year UROP grant from the [https://crl.iupui.edu/studentprograms/crlprograms/index.html Center for Research and Learning (CRL)] at IUPUI. Congratulations! 
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* Aug: Ryan Snyder's first-author [https://doi.org/10.1063/5.0156327 Sparse-GPR-QM/MM] paper was published in ''JCP''. Congratulations!
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* July: Jingzhi Pu presented at the 2023 CHARMM Developers' Meeting at the U of Michigan.
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* July: Ryan Snyder successfully defended his PhD thesis. Congratulations!
 +
* Apr: Hysum Qazi joined the lab for undergraduate research. Welcome!
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* Apr: Mellisa Hege successfully defended her PhD thesis. Congratulations!
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* Mar: Bryant Kim and Ryan Snyder presented at the Spring 2023 ACS National Meeting.
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* Mar: Jingzhi Pu co-organized an [https://acs.digitellinc.com/acs/sessions/561702/view  ACS COMP symposium in honor of Prof. Jiali Gao].
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* Mar: Bryant Kim successfully defended his PhD thesis. Congratulations!
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* Mar: Mellisa Hege published her first-author [https://doi.org/10.1016/j.bpc.2023.106992 SP-DNA] paper. Congratulations!
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=== 2022 ===
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* Nov: Ryan Young successfully defended his PhD thesis. Congratulations!
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* Oct: Ryan Snyder published his first-author [https://pubs.rsc.org/en/content/articlelanding/2022/CP/D2CP02820D GPRwDO-QM/MM] paper, which was also selected as a [https://rsc.li/pccp-hot22 2022 ''PCCP'' HOT Article]. Congratulations!
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* July: Jingzhi Pu presented at the 2022 CHARMM Developers' Meeting at Harvard University.
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* June: Bryant Kim accepted a drug-discovery internship position at [https://roivant.com/ Roivant Sciences] in NYC.
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* May: Rebekah Jackson received an ACS Physical Chemistry Undergraduate Award. Congratulations!
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* Mar: Jingzhi Pu received an [https://science.iupui.edu/honors-convocation/index.html#school-awards IU Trustees' Teaching Award].
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* Mar: Rebekah Jackson received an [https://www.training.nih.gov/programs/postbac_irta NIH IRTA] postbaccalaurate intramural research training award. Congratulations!
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=== 2021 ===
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* Dec: Jingzhi Pu and Ryan Snyder received an RSFG grant from the Office of the Vice Chancellor for Research at IUPUI.
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* Nov: Bryant Kim's first-author [https://pubs.acs.org/doi/10.1021/acs.jctc.1c00567 dp-QM/MM] paper was published. Congratulations!
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* Oct: Rebekah Jackson received a second [https://crl.iupui.edu/articlesfolder/researchprogramarticlesfolder/uroparticle.html UROP] grant for undergraduate research. Congratulations!
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* July: Bryant Kim's first-author [https://pubs.acs.org/doi/abs/10.1021/acs.jctc.1c00245 RP-FM-CV] paper was published. Congratulations!
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* July: Jingzhi Pu presented at the 2021 CHARMM Developers' Meeting hosted by the Michigan State University.
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* June: Rebekah Jackson received an [https://crl.iupui.edu/articlesfolder/researchprogramarticlesfolder/uroparticle.html UROP] grant for summer undergraduate research. Congratulations!
 +
* Apr: Bryant Kim won the "Grand Prize" poster award at the "Think Like A Molecule" Symposium sponsored by ACS Indiana Section. Congratulations!
 +
* Apr: Ryan Snyder gave a talk at the "Think Like A Molecule" Symposium sponsored by ACS Indiana Section.
 +
 +
=== 2020 ===
 +
* July: Jingzhi Pu presented at the 2020 CHARMM Developers' Meeting hosted by Harvard University and Boston University. 
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=== 2019 ===
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* June: Jingzhi Pu presented at the Santa Fe Free Energy Meeting [https://www.freeenergy-santafe.org "Free energy calculations: Entering the fourth decade of adventure in Chemistry and Biophysics"].
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=== 2018 ===
 +
* Sept: Ryan Snyder joined the lab as a Ph.D. student. Welcome!
 +
* July: Jingzhi Pu presented at the 2018 CHARMM Developers' Meeting at U of Chicago.
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* June: Jingzhi Pu received an RSFG grant from the Office of the Vice Chancellor for Research at IUPUI.
 +
* June: Jingzhi Pu presented at the [http://www.wccb2018.org/Speakers/Speakers.html 2nd Worldwide Chinese Computational Biology and Molecular Simulation Conference] at Sun Yat-sen University, Guangzhou.
 +
* June: Harry Wang from Carmel High School joined the lab for Project STEM research internship. Welcome!
 +
* May: Jingzhi Pu received a Summer Faculty Grant from the Purdue Research Foundation.
 +
* Apr: Pu lab received a computing grant (100K CPU hrs) from the Center for Functional Nanomaterials (CFN) at the Brookhaven National Laboratory (BNL).
 +
* Apr: Bryant Kim won a 1st place poster award at the [http://www.acsindiana.org/acs/category/awards/ "Think Like A Molecule" Symposium] sponsored by ACS Indiana Section. Congratulations!
 +
* Mar: Bryant Kim presented a poster at the [https://global.acs.org/events/255th-acs-national-meeting-exposition/ 255th ACS National Meeting] in New Orleans.
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* Jan: Ryan Snyder joined the lab as a post-baccalaureate student. Welcome!
 +
 +
=== 2017 ===
 +
* Sept: Ryan Young joined the lab as a Ph.D. student. Welcome!
 +
* July: Jingzhi Pu presented at the 2017 CHARMM Developers' Meeting at Harvard, Cambridge, MA.
 +
* July: Jingzhi Pu presented at the Telluride research conference "Free energy calculations: Three decades of adventure in chemistry and biophysics".
 +
* June: Joanna Zhang from Carmel High School and Yiyang (Ben) Sun from The King’s Academy joined the lab for Project STEM/SEED research internship. Welcome!
 +
* Jan: Mellisa Hege, Cameron Meadows, Darlene Evans, and Seth Keeton joined the lab for undergraduate research.
 +
* Jan: Bryant Kim joined the lab as a Ph.D. student. Welcome!
 +
 +
=== 2016 ===
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* Aug: Jingzhi Pu co-organized an [[Media:ACS_QMMM_Symposium_Fall2016_Philly.pdf|ACS COMP symposium]] and presented at the [http://web2011.acscomp.org/meetings/national-acs-program/philadelphia-fall-2016 ACS 252nd National Meeting] in Philadelphia ([[Media:ACS_COMP_tech_program_Fall2016.pdf|Program]]).
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* July: Jingzhi Pu presented at the 2016 CHARMM Developers' Meeting at U of Michigan, Ann Arbor.
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* Mar: Jingzhi Pu presented a chemistry seminar at [http://www.ucdenver.edu/academics/colleges/CLAS/Departments/chemistry/AboutUs/Pages/Seminar.aspx University of Colorado Denver].
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=== 2015 ===
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* Sept: Jingzhi Pu presented at the [http://www.ks.uiuc.edu/Announcements/Symposium/ Midwest Computational Biomolecular Modeling Symposium] at UIUC (read [http://www-s.ks.uiuc.edu/History/symposium/ Editorial Overview]).
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* Aug: Jingzhi Pu presented at the [http://www.acs.org/content/acs/en/meetings/fall-2015.html ACS 250th National Meeting] in Boston.
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* Aug: Jingzhi Pu's [http://projectreporter.nih.gov/project_info_details.cfm?aid=8958346&icde=25623525 R15 grant] is funded by NIH.
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* July: Jingzhi Pu presented at a [http://vothgroup.uchicago.edu/conferences/ Snowmass Biophysics Workshop].
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* June: Jingzhi Pu received an [[Media:internalawards2015_000.pdf|RSFG]] grant from the Office of the Vice Chancellor for Research at IUPUI.
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* Apr: Jingzhi Pu received an International Travel Grant from the Purdue Research Foundation.
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* Feb: Jingzhi Pu presented a [http://engr.iupui.edu/departments/me/research/seminars/_documents/Spring%202015%20ME_IUPUI_seminar_JPu.pdf Mechanical Engineering seminar] at IUPUI.
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=== 2014 ===
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* Oct: Jingzhi Pu gave a talk at the [http://martinkarplus.net/ Martin Karplus Celebration Symposium].
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* May: Jingzhi Pu received a Summer Faculty Grant from the Purdue Research Foundation.
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* Apr: Mulpuri Nagaraju (Raju) joined the lab as a postdoc. Welcome!
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=== 2013 ===
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* Sept: Pedro Ojeda-May, Yan Zhou, and Jingzhi Pu presented at the [http://www.acs.org/content/acs/en/meetings/fall-2013.html ACS 246th National Meeting] in Indianapolis.
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* Aug: Jingzhi Pu co-organized a [http://www.telluridescience.org/meetings/workshop-details?wid=376 TSRC Workshop].
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* July: Jingzhi Pu presented at a CHARMM Developers' Meeting in Zurich.
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* June: Jacob Lucas from [http://www.716.ips.k12.in.us/ Arsenal Tech High School] came back to the lab for his second [http://portal.acs.org/portal/acs/corg/content?_nfpb=true&_pageLabel=PP_TRANSITIONMAIN&node_id=1588&use_sec=false&sec_url_var=region1&__uuid=f05dced4-fb8f-4e50-9ab0-71bd0e60efa1 SEED] research internship.
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* Jan: Jingzhi Pu gave a physical chemistry seminar at Purdue University.
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=== 2012 ===
 
=== 2012 ===
−
* Jun: Jacob Lucas from [http://www.716.ips.k12.in.us/ Arsenal Tech High School] joined the lab for a [http://portal.acs.org/portal/acs/corg/content?_nfpb=true&_pageLabel=PP_TRANSITIONMAIN&node_id=1588&use_sec=false&sec_url_var=region1&__uuid=f05dced4-fb8f-4e50-9ab0-71bd0e60efa1 SEED] research internship.  
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* Nov: Jingzhi Pu gave a seminar in the Department of Chemistry at Northern Kentucky University.
−
* May: Jingzhi Pu visited [http://www.lobos.nih.gov/lcb/ Laboratory of Computational Biology at NIH/NHLBI].
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* June: Jacob Lucas from [http://www.716.ips.k12.in.us/ Arsenal Tech High School] joined the lab for a [http://portal.acs.org/portal/acs/corg/content?_nfpb=true&_pageLabel=PP_TRANSITIONMAIN&node_id=1588&use_sec=false&sec_url_var=region1&__uuid=f05dced4-fb8f-4e50-9ab0-71bd0e60efa1 SEED] research internship. Welcome!
−
* May: The group is moved! Our new home is the O'Brien computing lab LD320.
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* May: Jingzhi Pu visited and presented at the [http://www.lobos.nih.gov/lcb/ Laboratory of Computational Biology at NIH/NHLBI].
−
* Apr: Cornelius Audu received a “Second Place” poster award at the [http://research.iupui.edu/enterprise/archive/2012/enterprise-04-23.html 2012 Research Day] event. [http://chem.iupui.edu/news/science-students-honored-2012-research-day Read more].
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* May: The lab was moved! Our new home is the O'Brien computing lab LD320.
−
* Jan: Four students (Hongdi Bai, Brett Palencer, Anne Cook, and Kimberly Adams) joined the lab for undergraduate research.
+
* Apr: Cornelius Audu received a “Second Place” poster award at the [http://research.iupui.edu/enterprise/archive/2012/enterprise-04-23.html 2012 Research Day] event. [http://chem.iupui.edu/news/science-students-honored-2012-research-day read more].
 +
* Jan: Four students (Hongdi Bai, Brett Palencer, Anne Cook, and Kimberly Adams) joined the lab for undergraduate research. Welcome!
  
 
=== 2011 ===
 
=== 2011 ===
Line 10: Line 101:
 
* Nov: Cornelius Audu was selected to attend the [http://ls.berkeley.edu/bep/conference Berkeley Edge Conference].   
 
* Nov: Cornelius Audu was selected to attend the [http://ls.berkeley.edu/bep/conference Berkeley Edge Conference].   
 
* Oct: ''[[Cluster|Pyrite]]'' - the group high performance computing cluster (HPCC) is in production.
 
* Oct: ''[[Cluster|Pyrite]]'' - the group high performance computing cluster (HPCC) is in production.
−
* Sept: Aimee Rinas joined the group as a PhD student.
+
* Sept: Aimee Rinas joined the group as a PhD student. Welcome!
−
* Aug: Jingzhi Pu gave spoke at a [http://www.telluridescience.org/reg/workshop_details.php?wid=339 a TSRC Workshop on Biomolecular Machines].   
+
* Aug: Jingzhi Pu spoke at a [http://www.telluridescience.org/reg/workshop_details.php?wid=339 TSRC Workshop] on Biomolecular Machines.   
−
* July: Jingzhi Pu gave a talk at a [http://www.telluridescience.org/reg/workshop_details.php?wid=308 TSRC Workshop on Free Energy Simulations].   
+
* July: Jingzhi Pu spoke at a [http://www.telluridescience.org/reg/workshop_details.php?wid=308 TSRC Workshop] on Free Energy Simulations.   
−
* July: Karen Thomson joined the lab as a part-time MS student.
+
* July: Karen Thomson joined the lab as a part-time MS student. Welcome!
−
* Jun: Jingzhi Pu organized a mini-symposium on QM/MM at the [http://cerm_regional.sites.acs.org/symposia.htm 42<sup>nd</sup> ACS Central Regional Meeting].   
+
* June: Jingzhi Pu organized a mini-symposium on QM/MM at the [http://cerm_regional.sites.acs.org/symposia.htm 42<sup>nd</sup> ACS Central Regional Meeting].   
−
* Jun: Cornelius Audu joined the lab as an [http://crl.iupui.edu/programs/McNair/index.asp McNair Scholar] to conduct undergraduate research.  
+
* June: Cornelius Audu joined the lab as an [http://crl.iupui.edu/programs/McNair/index.asp McNair Scholar] to conduct undergraduate research. Welcome! 
 
* May: Jingzhi Pu was selected as a faculty recipient of "SONY Scholarship".  [http://newsinfo.iu.edu/news/page/normal/18624.html IU Press Release]
 
* May: Jingzhi Pu was selected as a faculty recipient of "SONY Scholarship".  [http://newsinfo.iu.edu/news/page/normal/18624.html IU Press Release]
−
* Mar: Pedro Ojeda-May joined the group from Stuttgart Univ. (Germany) as a postdoc.
+
* Mar: Pedro Ojeda-May from Stuttgart Univ. (Germany) joined the group as a postdoc. Welcome!
−
* Jan: Yan Zhou joined the group from Univ. of Minnesota as a postdoc.
+
* Jan: Yan Zhou from the Univ. of Minnesota joined the group as a postdoc. Welcome!

Latest revision as of 11:17, 7 November 2024

2024

2023

  • Sept: Taemoor Hasan and Salma Abdelhamid joined the lab as 1st-year Research Immersion Program (1RIP) undergraduate scholars. Welcome!
  • Sept: Tinh Ho joined the lab as a PhD student co-advised by Prof. Partha Basu. Welcome!
  • Sept: Dongru Li joined the lab as a PhD student. Welcome!
  • Sept: Hysum Qazi received an academic-year UROP grant from the Center for Research and Learning (CRL) at IUPUI. Congratulations!
  • Aug: Ryan Snyder's first-author Sparse-GPR-QM/MM paper was published in JCP. Congratulations!
  • July: Jingzhi Pu presented at the 2023 CHARMM Developers' Meeting at the U of Michigan.
  • July: Ryan Snyder successfully defended his PhD thesis. Congratulations!
  • Apr: Hysum Qazi joined the lab for undergraduate research. Welcome!
  • Apr: Mellisa Hege successfully defended her PhD thesis. Congratulations!
  • Mar: Bryant Kim and Ryan Snyder presented at the Spring 2023 ACS National Meeting.
  • Mar: Jingzhi Pu co-organized an ACS COMP symposium in honor of Prof. Jiali Gao.
  • Mar: Bryant Kim successfully defended his PhD thesis. Congratulations!
  • Mar: Mellisa Hege published her first-author SP-DNA paper. Congratulations!

2022

  • Nov: Ryan Young successfully defended his PhD thesis. Congratulations!
  • Oct: Ryan Snyder published his first-author GPRwDO-QM/MM paper, which was also selected as a 2022 PCCP HOT Article. Congratulations!
  • July: Jingzhi Pu presented at the 2022 CHARMM Developers' Meeting at Harvard University.
  • June: Bryant Kim accepted a drug-discovery internship position at Roivant Sciences in NYC.
  • May: Rebekah Jackson received an ACS Physical Chemistry Undergraduate Award. Congratulations!
  • Mar: Jingzhi Pu received an IU Trustees' Teaching Award.
  • Mar: Rebekah Jackson received an NIH IRTA postbaccalaurate intramural research training award. Congratulations!

2021

  • Dec: Jingzhi Pu and Ryan Snyder received an RSFG grant from the Office of the Vice Chancellor for Research at IUPUI.
  • Nov: Bryant Kim's first-author dp-QM/MM paper was published. Congratulations!
  • Oct: Rebekah Jackson received a second UROP grant for undergraduate research. Congratulations!
  • July: Bryant Kim's first-author RP-FM-CV paper was published. Congratulations!
  • July: Jingzhi Pu presented at the 2021 CHARMM Developers' Meeting hosted by the Michigan State University.
  • June: Rebekah Jackson received an UROP grant for summer undergraduate research. Congratulations!
  • Apr: Bryant Kim won the "Grand Prize" poster award at the "Think Like A Molecule" Symposium sponsored by ACS Indiana Section. Congratulations!
  • Apr: Ryan Snyder gave a talk at the "Think Like A Molecule" Symposium sponsored by ACS Indiana Section.

2020

  • July: Jingzhi Pu presented at the 2020 CHARMM Developers' Meeting hosted by Harvard University and Boston University.

2019

2018

  • Sept: Ryan Snyder joined the lab as a Ph.D. student. Welcome!
  • July: Jingzhi Pu presented at the 2018 CHARMM Developers' Meeting at U of Chicago.
  • June: Jingzhi Pu received an RSFG grant from the Office of the Vice Chancellor for Research at IUPUI.
  • June: Jingzhi Pu presented at the 2nd Worldwide Chinese Computational Biology and Molecular Simulation Conference at Sun Yat-sen University, Guangzhou.
  • June: Harry Wang from Carmel High School joined the lab for Project STEM research internship. Welcome!
  • May: Jingzhi Pu received a Summer Faculty Grant from the Purdue Research Foundation.
  • Apr: Pu lab received a computing grant (100K CPU hrs) from the Center for Functional Nanomaterials (CFN) at the Brookhaven National Laboratory (BNL).
  • Apr: Bryant Kim won a 1st place poster award at the "Think Like A Molecule" Symposium sponsored by ACS Indiana Section. Congratulations!
  • Mar: Bryant Kim presented a poster at the 255th ACS National Meeting in New Orleans.
  • Jan: Ryan Snyder joined the lab as a post-baccalaureate student. Welcome!

2017

  • Sept: Ryan Young joined the lab as a Ph.D. student. Welcome!
  • July: Jingzhi Pu presented at the 2017 CHARMM Developers' Meeting at Harvard, Cambridge, MA.
  • July: Jingzhi Pu presented at the Telluride research conference "Free energy calculations: Three decades of adventure in chemistry and biophysics".
  • June: Joanna Zhang from Carmel High School and Yiyang (Ben) Sun from The King’s Academy joined the lab for Project STEM/SEED research internship. Welcome!
  • Jan: Mellisa Hege, Cameron Meadows, Darlene Evans, and Seth Keeton joined the lab for undergraduate research.
  • Jan: Bryant Kim joined the lab as a Ph.D. student. Welcome!

2016

2015

2014

  • Oct: Jingzhi Pu gave a talk at the Martin Karplus Celebration Symposium.
  • May: Jingzhi Pu received a Summer Faculty Grant from the Purdue Research Foundation.
  • Apr: Mulpuri Nagaraju (Raju) joined the lab as a postdoc. Welcome!

2013

  • Sept: Pedro Ojeda-May, Yan Zhou, and Jingzhi Pu presented at the ACS 246th National Meeting in Indianapolis.
  • Aug: Jingzhi Pu co-organized a TSRC Workshop.
  • July: Jingzhi Pu presented at a CHARMM Developers' Meeting in Zurich.
  • June: Jacob Lucas from Arsenal Tech High School came back to the lab for his second SEED research internship.
  • Jan: Jingzhi Pu gave a physical chemistry seminar at Purdue University.

2012

  • Nov: Jingzhi Pu gave a seminar in the Department of Chemistry at Northern Kentucky University.
  • June: Jacob Lucas from Arsenal Tech High School joined the lab for a SEED research internship. Welcome!
  • May: Jingzhi Pu visited and presented at the Laboratory of Computational Biology at NIH/NHLBI.
  • May: The lab was moved! Our new home is the O'Brien computing lab LD320.
  • Apr: Cornelius Audu received a “Second Place” poster award at the 2012 Research Day event. read more.
  • Jan: Four students (Hongdi Bai, Brett Palencer, Anne Cook, and Kimberly Adams) joined the lab for undergraduate research. Welcome!

2011

  • Nov: Jingzhi Pu presented a BioMath seminar at IUPUI.
  • Nov: Cornelius Audu was selected to attend the Berkeley Edge Conference.
  • Oct: Pyrite - the group high performance computing cluster (HPCC) is in production.
  • Sept: Aimee Rinas joined the group as a PhD student. Welcome!
  • Aug: Jingzhi Pu spoke at a TSRC Workshop on Biomolecular Machines.
  • July: Jingzhi Pu spoke at a TSRC Workshop on Free Energy Simulations.
  • July: Karen Thomson joined the lab as a part-time MS student. Welcome!
  • June: Jingzhi Pu organized a mini-symposium on QM/MM at the 42nd ACS Central Regional Meeting.
  • June: Cornelius Audu joined the lab as an McNair Scholar to conduct undergraduate research. Welcome!
  • May: Jingzhi Pu was selected as a faculty recipient of "SONY Scholarship". IU Press Release
  • Mar: Pedro Ojeda-May from Stuttgart Univ. (Germany) joined the group as a postdoc. Welcome!
  • Jan: Yan Zhou from the Univ. of Minnesota joined the group as a postdoc. Welcome!
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